fatmauc@illinois.edu
Holonyak Micro & Nanotechnology Lab
Education
Bachelor of Engineering in Biomedical Engineering, Erciyes University, 2014
Master of Science in Biomedical Engineering, Erciyes University, 2017
PhD in Biomedical Engineering, Erciyes University, 2021
Research Interest
I am interested in developing biosensors for point-of-care diagnostics of pathogens and cancer-related biomarkers. My current research focuses on biomolecular detection using CRISPR-based methods in combination with photonic crystal biosensors.
Publications
- Al-Shaebi, Z., Uysal Ciloglu, F., Nasser, M., Kahraman, M., & Aydin, O. ‘’Staphylococcus
Aureus-Related antibiotic resistance detection using synergy of Surface-Enhanced Raman
spectroscopy and deep learning’’ Biomedical Signal Processing and Control, 91, 105933,
2024. - Al, S., Uysal Ciloglu, F., Akcay, A., & Koluman, A. ‘’Machine learning models for prediction
of Escherichia coli O157: H7 growth in raw ground beef at different storage temperatures’’
Meat Science, 210, 109421, 2024. - Uysal Ciloglu F., Hora M., Gundogdu A., Kahraman M., Tokmakci M., Aydin O. ‘’SERS-based
sensor with a machine learning based effective feature extraction technique for fast
detection of colistin-resistant Klebsiella pneumoniae’’. Analytica Chimica Acta, 1221, 340094,
2022. - Al-Shaebi Z., Uysal Ciloglu F., Nasser M., Aydin O. ‘’Highly accurate identification of
bacteria’s antibiotic resistance based on Raman spectroscopy and U-Net deep learning
algorithms’’ ACS omega, 7(33), 29443-29451, 2022. - Akdeniz M., Uysal Ciloglu F., Tunc C. U., Yilmaz U., Kanarya D., Atalay P., Aydin O.
‘’Investigation of mammalian cells expressing SARS-CoV-2 proteins by surface-enhanced
Raman scattering and multivariate analysis’’. Analyst, 147(6), 1213-1221, 2022. - Arslan A. H., Uysal Ciloglu F., Yilmaz U., Simsek E., Aydin O., ‘’Discrimination of waterborne
pathogens, Cryptosporidium parvum oocysts and bacteria using surface-enhanced Raman
spectroscopy coupled with principal component analysis and hierarchical clustering’’,
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 267, 120475, 2022. - Uysal Ciloglu F., Caliskan A., Saridag A. M., Kilic I. H., Tokmakci M., Kahraman M., Aydin O.
‘’Drug-resistant Staphylococcus Aureus Bacteria Detection with the Combination of Surface-
enhanced Raman Spectroscopy and Deep Learning Techniques’’, Scientific Reports, 11,
18444, 2021. - Uysal Ciloglu F., Sarıdag A. M., Kılıc I. H., Tokmakcı M., Kahraman M., Aydin O.
Identification of methicillin-resistant Staphylococcus aureus bacteria using surface-enhanced
Raman spectroscopy and machine learning techniques. Analyst, 145(23), 7559-7570, 2020.
Honors and Awards
- TUBITAK 2219 – International Postdoctoral Research Fellowship Program, 2024
- The Resilience Challenge Award, First Place Winner, King Abdullah University of Science and Technology, 2022
- Bachelor of Engineering in Biomedical Engineering with Honors, Turkey, 2014